IL_7ZRS_128

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_128 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1122

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZRS|1|5|C|759
7ZRS|1|5|U|760
7ZRS|1|5|G|761
7ZRS|1|5|A|762
7ZRS|1|5|U|763
7ZRS|1|5|G|764
*
7ZRS|1|5|C|769
7ZRS|1|5|G|770
7ZRS|1|5|G|771
7ZRS|1|5|A|772
7ZRS|1|5|U|773
7ZRS|1|5|G|774

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BK

60S ribosomal protein L13-A

Chain BZ

60S ribosomal protein L28

Chain Bn

60S ribosomal protein L42-A