IL_7ZRS_238

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_238 not in the Motif Atlas

Geometric match to IL_4LFB_010

Geometric discrepancy: 0.202

The information below is about IL_4LFB_010

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7ZRS|1|6|G|10
7ZRS|1|6|C|11
7ZRS|1|6|G|12
*
7ZRS|1|6|C|23
7ZRS|1|6|A|24
7ZRS|1|6|C|25

Current chains

Chain 6

tRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AB

40S ribosomal protein S1-A