IL_7ZRS_244

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

7ZRS|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_244 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2085

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7ZRS|1|2|U|893
7ZRS|1|2|U|894
7ZRS|1|2|G|895
7ZRS|1|2|U|896
7ZRS|1|2|C|897
7ZRS|1|2|A|898
7ZRS|1|2|G|899
*
7ZRS|1|2|C|910
7ZRS|1|2|U|911
7ZRS|1|2|U|912
7ZRS|1|2|G|913
7ZRS|1|2|G|914
7ZRS|1|2|A|915
7ZRS|1|2|U|916
7ZRS|1|2|U|917
7ZRS|1|2|U|918
7ZRS|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain AB

40S ribosomal protein S1-A

Chain AO

40S ribosomal protein S14-B