IL_7ZS5_053

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7ZS5|1|1|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZS5_053 not in the Motif Atlas

Geometric match to IL_7A0S_019

Geometric discrepancy: 0.2681

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

7ZS5|1|1|G|1262
7ZS5|1|1|A|1263
7ZS5|1|1|G|1264
7ZS5|1|1|U|1265
7ZS5|1|1|G|1266
*
7ZS5|1|1|C|1275
7ZS5|1|1|U|1276
7ZS5|1|1|C|1277

Current chains

Chain 1

25S ribosomal RNA

Nearby chains