IL_7ZS5_084

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

7ZS5|1|1|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZS5_084 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1457

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7ZS5|1|1|C|2196
7ZS5|1|1|C|2197
7ZS5|1|1|A|2198
7ZS5|1|1|G|2199
*
7ZS5|1|1|C|2245
7ZS5|1|1|G|2246

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BC

60S ribosomal protein L2-A