IL_7ZS5_109

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

7ZS5|1|1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZS5_109 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.1139

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7ZS5|1|1|U|2891
7ZS5|1|1|A|2892
*
7ZS5|1|1|U|2909
7ZS5|1|1|A|2910
7ZS5|1|1|A|2911
7ZS5|1|1|G|2912

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BJ

60S ribosomal protein L9-A

Chain BP

60S ribosomal protein L16-A

Chain Bn

60S ribosomal protein L40-A