IL_7ZS5_111

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7ZS5|1|1|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZS5_111 not in the Motif Atlas

Homologous match to IL_8C3A_122

Geometric discrepancy: 0.5876

The information below is about IL_8C3A_122

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7ZS5|1|1|C|2960
7ZS5|1|1|G|2961
*
7ZS5|1|1|C|2970
7ZS5|1|1|A|2971
7ZS5|1|1|G|2972

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain BC

60S ribosomal protein L2-A

Chain BK

60S ribosomal protein L10