IL_7ZS5_123

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

7ZS5|1|1|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZS5_123 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.2064

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7ZS5|1|1|C|3193
7ZS5|1|1|C|3194
*
7ZS5|1|1|G|3197
7ZS5|1|1|U|3198
7ZS5|1|1|G|3199

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BJ

60S ribosomal protein L9-A

Chain BN

60S ribosomal protein L14-A

Chain BP

60S ribosomal protein L16-A