IL_7ZS5_133

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZS5_133 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.2361

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7ZS5|1|1|A|3342
7ZS5|1|1|G|3343
7ZS5|1|1|A|3344
7ZS5|1|1|G|3345
*
7ZS5|1|1|C|3360
7ZS5|1|1|G|3361
7ZS5|1|1|A|3362
7ZS5|1|1|U|3363

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BS

60S ribosomal protein L19-A