IL_7ZUX_022

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_022 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.1209

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

7ZUX|1|2|G|389
7ZUX|1|2|G|390
7ZUX|1|2|A|391
*
7ZUX|1|2|U|406
7ZUX|1|2|A|407
7ZUX|1|2|C|408

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain DI

40S ribosomal protein S8-B

Chain EU

60S ribosomal protein L23-A