IL_7ZUX_028

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

7ZUX|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_028 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.3382

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7ZUX|1|2|G|514
7ZUX|1|2|A|515
7ZUX|1|2|G|516
*
7ZUX|1|2|C|536
7ZUX|1|2|G|537
7ZUX|1|2|A|538
7ZUX|1|2|G|539
7ZUX|1|2|G|540
7ZUX|1|2|A|541
7ZUX|1|2|A|542
7ZUX|1|2|C|543

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DJ

40S ribosomal protein S9-A

Chain De

40S ribosomal protein S30-A