IL_7ZUX_038

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_038 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.3698

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7ZUX|1|2|U|699
7ZUX|1|2|C|700
*
7ZUX|1|2|G|738
7ZUX|1|2|G|739
7ZUX|1|2|A|740

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DH

40S ribosomal protein S7-A

Chain DL

40S ribosomal protein S11-A