IL_7ZUX_044

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7ZUX|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_044 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1571

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7ZUX|1|2|G|867
7ZUX|1|2|G|868
7ZUX|1|2|A|869
7ZUX|1|2|C|870
*
7ZUX|1|2|G|957
7ZUX|1|2|U|958
7ZUX|1|2|U|959
7ZUX|1|2|U|960
7ZUX|1|2|U|961

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DN

40S ribosomal protein S13

Chain Db

40S ribosomal protein S27-A