IL_7ZUX_054

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7ZUX|1|2|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_054 not in the Motif Atlas

Homologous match to IL_4V88_439

Geometric discrepancy: 0.546

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7ZUX|1|2|G|1051
7ZUX|1|2|U|1052
7ZUX|1|2|G|1053
*
7ZUX|1|2|C|1066
7ZUX|1|2|C|1067

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DB

40S ribosomal protein S1-A

Chain DR

40S ribosomal protein S17-A

Chain Db

40S ribosomal protein S27-A