IL_7ZUX_056

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7ZUX|1|2|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_056 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.1614

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7ZUX|1|2|G|1146
7ZUX|1|2|A|1147
*
7ZUX|1|2|U|1630
7ZUX|1|2|A|1631
7ZUX|1|2|C|1632

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DC

40S ribosomal protein S2

Chain Da

40S ribosomal protein S26-B

Chain Em

60S ribosomal protein L41-A