3D structure

PDB id
7ZUX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Collided ribosome in a disome unit from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
UUCCC*GAUCA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZUX_104 not in the Motif Atlas
Homologous match to IL_5TBW_376
Geometric discrepancy: 0.2641
The information below is about IL_5TBW_376
Detailed Annotation
Symmetric double minor groove platform
Broad Annotation
No text annotation
Motif group
IL_58103.9
Basepair signature
cWW-cSH-cWS-tSW-L-R-cWW-R
Number of instances in this motif group
9

Unit IDs

7ZUX|1|4|U|32
7ZUX|1|4|U|33
7ZUX|1|4|C|34
7ZUX|1|4|C|35
7ZUX|1|4|C|36
*
7ZUX|1|4|G|41
7ZUX|1|4|A|42
7ZUX|1|4|U|43
7ZUX|1|4|C|44
7ZUX|1|4|A|45

Current chains

Chain 4
5S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain ED
60S ribosomal protein L5
Chain EJ
60S ribosomal protein L11-B

Coloring options:


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