IL_7ZUX_165

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_165 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.1886

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7ZUX|1|5|G|1562
7ZUX|1|5|C|1563
7ZUX|1|5|C|1564
*
7ZUX|1|5|G|1578
7ZUX|1|5|C|1579

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain EA

60S ribosomal protein L2-A

Chain EG

60S ribosomal protein L8-A

Chain EW

60S ribosomal protein L25