3D structure

PDB id
7ZUX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Collided ribosome in a disome unit from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
GUC*GAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZUX_246 not in the Motif Atlas
Geometric match to IL_1Y27_001
Geometric discrepancy: 0.1735
The information below is about IL_1Y27_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7ZUX|1|3|G|152
7ZUX|1|3|U|153
7ZUX|1|3|C|154
*
7ZUX|1|5|G|5
7ZUX|1|5|A|6
7ZUX|1|5|C|7

Current chains

Chain 3
5.8S ribosomal RNA
Chain 5
25S ribosomal RNA

Nearby chains

Chain EG
60S ribosomal protein L8-A
Chain EM
60S ribosomal protein L15-A
Chain EW
60S ribosomal protein L25

Coloring options:


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