IL_7ZW0_014

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

7ZW0|1|2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_014 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.1756

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7ZW0|1|2|G|204
7ZW0|1|2|U|205
7ZW0|1|2|A|206
*
7ZW0|1|2|U|259
7ZW0|1|2|U|260
7ZW0|1|2|U|261
7ZW0|1|2|U|262
7ZW0|1|2|C|263

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sS

40S ribosomal protein S4-B

Chain sT

40S ribosomal protein S6-B

Chain sV

40S ribosomal protein S8-A