IL_7ZW0_028

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

7ZW0|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_028 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.3219

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7ZW0|1|2|G|514
7ZW0|1|2|A|515
7ZW0|1|2|G|516
*
7ZW0|1|2|C|536
7ZW0|1|2|G|537
7ZW0|1|2|A|538
7ZW0|1|2|G|539
7ZW0|1|2|G|540
7ZW0|1|2|A|541
7ZW0|1|2|A|542
7ZW0|1|2|C|543

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sW

40S ribosomal protein S9-A

Chain sg

40S ribosomal protein S30-A