IL_7ZW0_103

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_103 not in the Motif Atlas

Geometric match to IL_4WF9_026

Geometric discrepancy: 0.3927

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

7ZW0|1|LA|U|177
7ZW0|1|LA|U|178
*
7ZW0|1|LA|A|238
7ZW0|1|LA|G|239
7ZW0|1|LA|U|240
7ZW0|1|LA|G|241

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LO

60S ribosomal protein L13-A

Chain Lk

60S ribosomal protein L35-A

Chain Lm

60S ribosomal protein L37-A