IL_7ZW0_144

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7ZW0|1|LA|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_144 not in the Motif Atlas

Homologous match to IL_8C3A_056

Geometric discrepancy: 0.1899

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7ZW0|1|LA|G|1207
7ZW0|1|LA|U|1208
7ZW0|1|LA|G|1209
*
7ZW0|1|LA|C|1296
7ZW0|1|LA|C|1297

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LC

5S ribosomal RNA; 5S rRNA

Chain LL

60S ribosomal protein L9-A

Chain LV

60S ribosomal protein L20-A

Chain Lp

60S ribosomal protein L40-A