IL_7ZW0_179

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_179 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.0812

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

7ZW0|1|LA|G|2276
7ZW0|1|LA|C|2277
*
7ZW0|1|LA|G|2307
7ZW0|1|LA|C|2308
7ZW0|1|LA|A|2309
7ZW0|1|LA|U|2310

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lq

60S ribosomal protein L41-A

Chain sl

Transfer RNA; tRNA