IL_7ZW0_186

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUAGA*UUUAUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_186 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3981

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7ZW0|1|LA|C|2444
7ZW0|1|LA|A|2445
7ZW0|1|LA|U|2446
7ZW0|1|LA|A|2447
7ZW0|1|LA|G|2448
7ZW0|1|LA|A|2449
*
7ZW0|1|LA|U|2497
7ZW0|1|LA|U|2498
7ZW0|1|LA|U|2499
7ZW0|1|LA|A|2500
7ZW0|1|LA|U|2501
7ZW0|1|LA|A|2502
7ZW0|1|LA|G|2503

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LB

60S ribosomal protein L1-A

Chain Ll

60S ribosomal protein L36-A

Chain sQ

40S ribosomal protein S1-A