IL_7ZW0_203

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

7ZW0|1|LA|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_203 not in the Motif Atlas

Geometric match to IL_5TBW_111

Geometric discrepancy: 0.0997

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7ZW0|1|LA|U|2891
7ZW0|1|LA|A|2892
*
7ZW0|1|LA|U|2909
7ZW0|1|LA|A|2910
7ZW0|1|LA|A|2911
7ZW0|1|LA|G|2912

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LF

60S ribosomal protein L3

Chain LL

60S ribosomal protein L9-A

Chain LR

60S ribosomal protein L16-A

Chain Lp

60S ribosomal protein L40-A