IL_8A3D_037

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GGA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3D_037 not in the Motif Atlas

Geometric match to IL_3W3S_003

Geometric discrepancy: 0.0749

The information below is about IL_3W3S_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8A3D|1|A|G|1173
8A3D|1|A|G|1174
8A3D|1|A|A|1175
*
8A3D|1|A|U|1186
8A3D|1|A|G|1187
8A3D|1|A|C|1188

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L5