IL_8A3D_043

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8A3D|1|A|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3D_043 not in the Motif Atlas

Homologous match to IL_5TBW_024

Geometric discrepancy: 0.08

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8A3D|1|A|C|1467
8A3D|1|A|C|1468
*
8A3D|1|A|G|1496
8A3D|1|A|A|1497
8A3D|1|A|G|1498

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L18

Chain U

60S ribosomal protein L27a

Chain V

60S ribosomal protein L29