IL_8A3D_127

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8A3D|1|A|A|4518, 8A3D|1|A|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3D_127 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.0599

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8A3D|1|A|C|4458
8A3D|1|A|U|4459
*
8A3D|1|A|A|4517
8A3D|1|A|A|4518
8A3D|1|A|C|4519
8A3D|1|A|G|4520

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain I

60S ribosomal protein L13a

Chain P

60S ribosomal protein L23