IL_8A3D_130

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

G(PSU)G*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3D_130 not in the Motif Atlas

Geometric match to IL_2W2H_002

Geometric discrepancy: 0.2874

The information below is about IL_2W2H_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_19557.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8A3D|1|A|G|4470
8A3D|1|A|PSU|4471
8A3D|1|A|G|4472
*
8A3D|1|A|C|4483
8A3D|1|A|A|4484
8A3D|1|A|C|4485

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain g

Ubiquitin-60S ribosomal protein L40

Chain o

60S ribosomal protein L9