IL_8A3D_139

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

A(OMG)ACAU(PSU)U*ACCA(PSU)CU

Length

15 nucleotides

Bulged bases

8A3D|1|A|C|4670

QA status

Modified nucleotides: OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A3D|1|A|A|4622
8A3D|1|A|OMG|4623
8A3D|1|A|A|4624
8A3D|1|A|C|4625
8A3D|1|A|A|4626
8A3D|1|A|U|4627
8A3D|1|A|PSU|4628
8A3D|1|A|U|4629
*
8A3D|1|A|A|4669
8A3D|1|A|C|4670
8A3D|1|A|C|4671
8A3D|1|A|A|4672
8A3D|1|A|PSU|4673
8A3D|1|A|C|4674
8A3D|1|A|U|4675

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain P

60S ribosomal protein L23

Chain Q

60S ribosomal protein L24