IL_8A3D_149
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- UCCUG*CGUCA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A3D_149 not in the Motif Atlas
- Geometric match to IL_8S95_002
- Geometric discrepancy: 0.3131
- The information below is about IL_8S95_002
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
8A3D|1|A|U|4885
8A3D|1|A|C|4886
8A3D|1|A|C|4887
8A3D|1|A|U|4888
8A3D|1|A|G|4889
*
8A3D|1|A|C|4930
8A3D|1|A|G|4931
8A3D|1|A|U|4932
8A3D|1|A|C|4933
8A3D|1|A|A|4934
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L6
- Chain I
- 60S ribosomal protein L13a
- Chain s
- 60S ribosomal protein L14
Coloring options: