IL_8A3D_188

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

8A3D|1|A|A2M|3785, 8A3D|1|A|C|3791, 8A3D|1|A|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3D_188 not in the Motif Atlas

Homologous match to IL_8P9A_318

Geometric discrepancy: 0.0925

The information below is about IL_8P9A_318

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

8A3D|1|A|C|3781
8A3D|1|A|5MC|3782
8A3D|1|A|A|3783
8A3D|1|A|A|3784
8A3D|1|A|A2M|3785
8A3D|1|A|U|3786
8A3D|1|A|G|3787
8A3D|1|A|C|3788
8A3D|1|A|C|3789
8A3D|1|A|U|3790
8A3D|1|A|C|3791
8A3D|1|A|OMG|3792
*
8A3D|1|A|OMC|3808
8A3D|1|A|G|3809
8A3D|1|A|C|3810
8A3D|1|A|G|3811

Current chains

Chain A

28S ribosomal RNA

Nearby chains