IL_8A3D_189

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GA(PSU)*AC

Length

5 nucleotides

Bulged bases

8A3D|1|A|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3D_189 not in the Motif Atlas

Geometric match to IL_7A0S_064

Geometric discrepancy: 0.3929

The information below is about IL_7A0S_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8A3D|1|A|G|4291
8A3D|1|A|A|4292
8A3D|1|A|PSU|4293
*
8A3D|1|A|A|4317
8A3D|1|A|C|4318

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain V

60S ribosomal protein L29

Chain i

60S ribosomal protein L36a