IL_8A3L_008

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

AGG*UGCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3L_008 not in the Motif Atlas

Geometric match to IL_1L9A_004

Geometric discrepancy: 0.3504

The information below is about IL_1L9A_004

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8A3L|1|A|A|74
8A3L|1|A|G|75
8A3L|1|A|G|76
*
8A3L|1|A|U|93
8A3L|1|A|G|94
8A3L|1|A|C|95
8A3L|1|A|U|96

Current chains

Chain A

16S ribosomal RNA

Nearby chains