IL_8A3L_011

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

AUG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUG,CAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3L_011 not in the Motif Atlas

Geometric match to IL_1RPU_001

Geometric discrepancy: 0.1822

The information below is about IL_1RPU_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8A3L|1|A|A|139
8A3L|1|A|U|140
8A3L|1|A|G|141
*
8A3L|1|A|C|222
8A3L|1|A|A|223
8A3L|1|A|U|224

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20