IL_8A3L_021

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3L_021 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1041

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8A3L|1|A|U|409
8A3L|1|A|G|410
8A3L|1|A|A|411
8A3L|1|A|A|412
8A3L|1|A|G|413
8A3L|1|A|A|414
8A3L|1|A|A|415
8A3L|1|A|G|416
*
8A3L|1|A|U|427
8A3L|1|A|G|428
8A3L|1|A|U|429
8A3L|1|A|A|430
8A3L|1|A|A|431
8A3L|1|A|A|432
8A3L|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4