IL_8A3L_121

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3L_121 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0665

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8A3L|1|a|C|1357
8A3L|1|a|G|1358
8A3L|1|a|A|1359
8A3L|1|a|G|1360
8A3L|1|a|G|1361
*
8A3L|1|a|C|1370
8A3L|1|a|G|1371
8A3L|1|a|U|1372
8A3L|1|a|A|1373
8A3L|1|a|G|1374

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28