3D structure

PDB id
8A3L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into the binding of bS1 to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.42 Å

Loop

Sequence
GC*GAU
Length
5 nucleotides
Bulged bases
8A3L|1|a|A|1981
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8A3L_140 not in the Motif Atlas
Homologous match to IL_4WF9_068
Geometric discrepancy: 0.1057
The information below is about IL_4WF9_068
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_14190.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
160

Unit IDs

8A3L|1|a|G|1770
8A3L|1|a|C|1771
*
8A3L|1|a|G|1980
8A3L|1|a|A|1981
8A3L|1|a|U|1982

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L2

Coloring options:


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