IL_8A57_013

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCAC*GAGUGAAACAGUUC

Length

18 nucleotides

Bulged bases

8A57|1|A|C|549, 8A57|1|A|U|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_013 not in the Motif Atlas

Geometric match to IL_5TBW_014

Geometric discrepancy: 0.1434

The information below is about IL_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8A57|1|A|G|527
8A57|1|A|C|528
8A57|1|A|A|529
8A57|1|A|C|530
*
8A57|1|A|G|541
8A57|1|A|A|542
8A57|1|A|G|543
8A57|1|A|U|544
8A57|1|A|G|545
8A57|1|A|A|546
8A57|1|A|A|547
8A57|1|A|A|548
8A57|1|A|C|549
8A57|1|A|A|550
8A57|1|A|G|551
8A57|1|A|U|552
8A57|1|A|U|553
8A57|1|A|C|554

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain X

50S ribosomal protein L24