IL_8A57_037

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCCCCAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_037 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.0949

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8A57|1|A|U|1050
8A57|1|A|C|1051
8A57|1|A|C|1052
8A57|1|A|C|1053
8A57|1|A|C|1054
8A57|1|A|A|1055
8A57|1|A|A|1056
8A57|1|A|A|1057
*
8A57|1|A|U|1196
8A57|1|A|A|1197

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L13

Chain T

50S ribosomal protein L20