IL_8A57_070

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGCAAAA*UGACGUAUA

Length

16 nucleotides

Bulged bases

8A57|1|A|A|1834, 8A57|1|A|C|1849, 8A57|1|A|U|1853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_070 not in the Motif Atlas

Geometric match to IL_7RQB_070

Geometric discrepancy: 0.0458

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8A57|1|A|U|1831
8A57|1|A|G|1832
8A57|1|A|C|1833
8A57|1|A|A|1834
8A57|1|A|A|1835
8A57|1|A|A|1836
8A57|1|A|A|1837
*
8A57|1|A|U|1846
8A57|1|A|G|1847
8A57|1|A|A|1848
8A57|1|A|C|1849
8A57|1|A|G|1850
8A57|1|A|U|1851
8A57|1|A|A|1852
8A57|1|A|U|1853
8A57|1|A|A|1854

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L2