IL_8A57_080

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8A57|1|A|C|2088, 8A57|1|A|U|2646, 8A57|1|A|A|2647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_080 not in the Motif Atlas

Geometric match to IL_5J7L_321

Geometric discrepancy: 0.0891

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8A57|1|A|A|2087
8A57|1|A|C|2088
8A57|1|A|G|2089
*
8A57|1|A|C|2645
8A57|1|A|U|2646
8A57|1|A|A|2647
8A57|1|A|U|2648

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32-2

Chain H

50S ribosomal protein L3

Chain V

50S ribosomal protein L22