IL_8A57_085

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUAGGAG*CAAUGGUGGGAUACUACC

Length

25 nucleotides

Bulged bases

8A57|1|A|U|2155, 8A57|1|A|G|2198, 8A57|1|A|G|2199, 8A57|1|A|C|2210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A57|1|A|G|2154
8A57|1|A|U|2155
8A57|1|A|A|2156
8A57|1|A|G|2157
8A57|1|A|G|2158
8A57|1|A|A|2159
8A57|1|A|G|2160
*
8A57|1|A|C|2194
8A57|1|A|A|2195
8A57|1|A|A|2196
8A57|1|A|U|2197
8A57|1|A|G|2198
8A57|1|A|G|2199
8A57|1|A|U|2200
8A57|1|A|G|2201
8A57|1|A|G|2202
8A57|1|A|G|2203
8A57|1|A|A|2204
8A57|1|A|U|2205
8A57|1|A|A|2206
8A57|1|A|C|2207
8A57|1|A|U|2208
8A57|1|A|A|2209
8A57|1|A|C|2210
8A57|1|A|C|2211

Current chains

Chain A

23S ribosomal RNA

Nearby chains