IL_8A57_105

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAUAAA*UGAAGC

Length

12 nucleotides

Bulged bases

8A57|1|A|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_105 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.0482

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8A57|1|A|G|2770
8A57|1|A|A|2771
8A57|1|A|U|2772
8A57|1|A|A|2773
8A57|1|A|A|2774
8A57|1|A|A|2775
*
8A57|1|A|U|2795
8A57|1|A|G|2796
8A57|1|A|A|2797
8A57|1|A|A|2798
8A57|1|A|G|2799
8A57|1|A|C|2800

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6

Chain M

50S ribosomal protein L13