IL_8A57_120

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUUGUACCGCUUGUACAGGAUAGG*CCUGGCUGUAUGACC

Length

40 nucleotides

Bulged bases

8A57|1|A|U|2141, 8A57|1|A|U|2142, 8A57|1|A|A|2152

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A57|1|A|G|2130
8A57|1|A|U|2131
8A57|1|A|U|2132
8A57|1|A|U|2133
8A57|1|A|G|2134
8A57|1|A|U|2135
8A57|1|A|A|2136
8A57|1|A|C|2137
8A57|1|A|C|2138
8A57|1|A|G|2139
8A57|1|A|C|2140
8A57|1|A|U|2141
8A57|1|A|U|2142
8A57|1|A|G|2143
8A57|1|A|U|2144
8A57|1|A|A|2145
8A57|1|A|C|2146
8A57|1|A|A|2147
8A57|1|A|G|2148
8A57|1|A|G|2149
8A57|1|A|A|2150
8A57|1|A|U|2151
8A57|1|A|A|2152
8A57|1|A|G|2153
8A57|1|A|G|2154
*
8A57|1|A|C|2211
8A57|1|A|C|2212
8A57|1|A|U|2213
8A57|1|A|G|2214
8A57|1|A|G|2215
8A57|1|A|C|2216
8A57|1|A|U|2217
8A57|1|A|G|2218
8A57|1|A|U|2219
8A57|1|A|A|2220
8A57|1|A|U|2221
8A57|1|A|G|2222
8A57|1|A|A|2223
8A57|1|A|C|2224
8A57|1|A|C|2225

Current chains

Chain A

23S ribosomal RNA

Nearby chains