IL_8AAF_029

3D structure

PDB id

8AAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

8AAF|1|f|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AAF_029 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.0649

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8AAF|1|f|G|833
8AAF|1|f|U|834
*
8AAF|1|f|G|859
8AAF|1|f|G|860
8AAF|1|f|C|861

Current chains

Chain f

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L19-A

Chain c

60S ribosomal protein L43-A

Chain j

60S ribosomal protein L2-A