IL_8AF0_004

3D structure

PDB id

8AF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of human angiogenin and RNA duplex

Experimental method

X-RAY DIFFRACTION

Resolution

2.43 Å

Loop

Sequence

ACG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_63702.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

13

Unit IDs

8AF0|1|C|A|37
8AF0|1|C|C|38
8AF0|1|C|G|39
*
8AF0|1|D|C|31
8AF0|1|D|C|32
8AF0|1|D|U|33

Current chains

Chain C

RNA (5'-R(*GP*CP*CP*CP*GP*CP*CP*UP*GP*UP*CP*AP*CP*GP*CP*GP*GP*GP*C)-3')

Chain D

RNA (5'-R(*GP*CP*CP*CP*GP*CP*CP*UP*GP*UP*CP*AP*CP*GP*CP*GP*GP*GP*C)-3')

Nearby chains

Chain A

Angiogenin

Chain B

Angiogenin