IL_8AGT_011
3D structure
- PDB id
- 8AGT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UU*AGUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGT_011 not in the Motif Atlas
- Geometric match to IL_7A0S_073
- Geometric discrepancy: 0.3701
- The information below is about IL_7A0S_073
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.6
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 41
Unit IDs
8AGT|1|f|U|177
8AGT|1|f|U|178
*
8AGT|1|f|A|238
8AGT|1|f|G|239
8AGT|1|f|U|240
8AGT|1|f|G|241
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain U
- 60S ribosomal protein L35-A
- Chain W
- 60S ribosomal protein L37-A
- Chain t
- 60S ribosomal protein L13-A
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