IL_8AGT_083
3D structure
- PDB id
- 8AGT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCAG*CG
- Length
- 6 nucleotides
- Bulged bases
- 8AGT|1|f|C|2197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGT_083 not in the Motif Atlas
- Homologous match to IL_5TBW_084
- Geometric discrepancy: 0.0734
- The information below is about IL_5TBW_084
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- No text annotation
- Motif group
- IL_88739.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8AGT|1|f|C|2196
8AGT|1|f|C|2197
8AGT|1|f|A|2198
8AGT|1|f|G|2199
*
8AGT|1|f|C|2245
8AGT|1|f|G|2246
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain a
- Ribosome quality control complex subunit 2
- Chain j
- 60S ribosomal protein L2-A
- Chain v
- Eukaryotic translation initiation factor 5A-1
Coloring options: