IL_8AGT_083

3D structure

PDB id

8AGT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state F

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8AGT|1|f|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGT_083 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.0734

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8AGT|1|f|C|2196
8AGT|1|f|C|2197
8AGT|1|f|A|2198
8AGT|1|f|G|2199
*
8AGT|1|f|C|2245
8AGT|1|f|G|2246

Current chains

Chain f

25S rRNA

Nearby chains

Chain a

Ribosome quality control complex subunit 2

Chain j

60S ribosomal protein L2-A

Chain v

Eukaryotic translation initiation factor 5A-1