IL_8AGT_140
3D structure
- PDB id
- 8AGT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGT_140 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.0989
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8AGT|1|h|G|21
8AGT|1|h|A|22
8AGT|1|h|A|23
8AGT|1|h|A|24
8AGT|1|h|G|25
8AGT|1|h|C|26
8AGT|1|h|A|27
*
8AGT|1|h|U|53
8AGT|1|h|U|54
8AGT|1|h|A|55
8AGT|1|h|A|56
8AGT|1|h|G|57
8AGT|1|h|C|58
Current chains
- Chain h
- 5S rRNA
Nearby chains
- Chain m
- 60S ribosomal protein L5
- Chain s
- 60S ribosomal protein L11-A
Coloring options: